Computational Simulation of Phase-Molecular Separation-DNA/RNA-Related Function Based on Gene Ontology using Combination of Computational Fluid Dynamics, Machine Learning and Membrane Systems

Main Article Content

Alireza Heidari

Abstract

Our evaluation and its outcomes/outcomes/hints spotlight that gaining a (having to do with measuring matters with numbers) knowledge of the proteome company in living cells, and its outcomes/consequences/tips for the (introduction and production/ organization of objects) of condensates and MLOs, is a critical assignment that the section separation field wishes to face/address. Our findings that dosage-sensitive (tiny chemical meeting commands interior of living things), insufficient (tiny chemical meeting commands internal of living things) and homologs especially, are overrepresented amongst human LLPS drivers, spotlight furthermore the needed component of preserving the mobile (oversupply/huge quantity) of the (bearing on everyone or issue) DNA/RNA merchandise at a great degree well suited with tightly managed LLPS conduct, to keep away from extreme (diseases/the have a look at of diseases) that unexpected errors in any direction may also cause. In-depth close interest of the records on DNA/RNA concentrations used in the LLPS experiments assisting our excessive self-belief dataset of human driver DNA/RNA s laid the uncertainties related with defining the frame-shape-related meaningful ranges of this essential restriction/guiding principle that leads and controls condensate (introduction and production/ organization of items), and recommended how those uncertainties can be lessened (something awful) and (ultimately) shortened.

Article Details

Heidari, A. (2025). Computational Simulation of Phase-Molecular Separation-DNA/RNA-Related Function Based on Gene Ontology using Combination of Computational Fluid Dynamics, Machine Learning and Membrane Systems. Annals of Advances in Chemistry, 9(1), 009–018. https://doi.org/10.29328/journal.aac.1001055
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Heidari A. Heteronuclear single–quantum correlation spectroscopy (HSQC) and heteronuclear multiple–bond correlation spectroscopy (HMBC) comparative study on malignant and benign human cancer cells, tissues and tumors under synchrotron and synchrocyclotron radiations. Chron Med Surg. 2018;2(3):144–156. Available from: http://dx.doi.org/10.18689/mjndr-1000110

Heidari A. Tetrakis [3,5–bis (trifluoromethyl) phenyl] borate (BARF)–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules. Med Res Clin Case Rep. 2018;2(1):113–126. Available from: https://scientiaricerca.com/srmrcr/pdf/SRMRCR-02-00023.pdf

Heidari A. Sydnone, Münchnone, Montréalone, Mogone, Montelukast, Quebecol and Palau’amine–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules. Sur Cas Stud Op Acc J. 2018;1(3). Available from: http://dx.doi.org/10.32474/SCSOAJ.2018.01.000113

Heidari A. Fornacite, orotic acid, rhamnetin, sodium ethyl xanthate (SEX) and spermine (spermidine or polyamine) nanomolecules incorporation into the nanopolymeric matrix (NPM). Int J Biochem Biomol. 2018;4(1):1–19. Available from: https://doi.org/10.37628/ijbb.v4i1.289

Heidari A, Gobato R. Putrescine, cadaverine, spermine and spermidine–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules. Parana J Sci Educ. 2018;4(5):1–14. Available from: https://www.openaccessjournals.com/articles/putrescine-cadaverine-spermine-and-spermidine--enhanced-precatalyst-preparation-stabilization-and-initiation-eppsi-nano-.pdf

Heidari A. Cadaverine (1,5–pentanediamine or pentamethylenediamine), diethyl azodicarboxylate (DEAD or DEADCAT) and putrescine (tetramethylenediamine) nano molecules incorporation into the nano polymeric matrix (NPM) by immersion of the nano polymeric modified electrode (NPME) as molecular enzymes and drug targets for human cancer cells, tissues and tumors treatment under synchrotron and synchrocyclotron radiations. HIV Sex Health Open J. 2018;1(1):4–11. Available from: https://www.sciepub.com/reference/369530

Heidari A. Improving the performance of nano–endofullerenes in polyaniline nanostructure–based biosensors by covering californium colloidal nanoparticles with multi–walled carbon nanotubes. J Adv Nanomater. 2018;3(1):1–28. Available from: http://dx.doi.org/10.22606/jan.2018.31001

Gobato R, Heidari A. Molecular mechanics and quantum chemical study on sites of action of sanguinarine using vibrational spectroscopy based on molecular mechanics and quantum chemical calculations. Malays J Chem. 2018;20(1):1–23. Available from: https://www.researchgate.net/publication/327395016

Heidari A. Vibrational biospectroscopic studies on anti–cancer nanopharmaceuticals (Part I). Malays J Chem. 2018;20(1):33–73. Available from: https://www.sciepub.com/reference/381168

Heidari A. Vibrational biospectroscopic studies on anti–cancer nanopharmaceuticals (Part II). Malays J Chem. 2018;20(1):74–117. Available from: https://www.sciepub.com/reference/369534

Heidari A. Uranocene (U(C8H8)2) and bis(cyclooctatetraene)iron (Fe(C8H8)2 or Fe(COT)2)–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules. Chem Rep. 2018;1(2):1–16. Available from: https://www.semanticscholar.org/paper/Uranocene-(U(C8H8)2)-and-Bis(Cyclooctatetraene)Iron-Heidari/f256e15bc3478e7fe814ccb25cc3a45239a61d2e

Heidari A. Biomedical systematic and emerging technological study on human malignant and benign cancer cells and tissues biospectroscopic analysis under synchrotron radiation. Glob Imaging Insights. 2018;3(3):1–7. Available from: https://www.oatext.com/pdf/GII-3-158.pdf

Heidari A. Deep–level transient spectroscopy and X–ray photoelectron spectroscopy (XPS) comparative study on malignant and benign human cancer cells and tissues with the passage of time under synchrotron radiation. Res Dev Mater Sci. 2018;7(2). Available from: http://dx.doi.org/10.31031/RDMS.2018.07.000659

Heidari A. C70–carboxyfullerenes nano molecules incorporation into the nano polymeric matrix (NPM) by immersion of the nano polymeric modified electrode (NPME) as molecular enzymes and drug targets for human cancer cells, tissues and tumors treatment under synchrotron and synchrocyclotron radiations. Glob Imaging Insights. 2018;3(3):1–7. Available from: https://oatext.com/c70-carboxyfullerenes-nano-molecules-incorporation-into-the-nano-polymeric-matrix.php

Heidari A. The effect of temperature on cadmium oxide (CdO) nanoparticles produced by synchrotron radiation in the human cancer cells, tissues and tumors. Int J Adv Chem. 2018;6(2):140–156. Available from: https://www.sciencepubco.com/index.php/IJAC/article/view/12521

Heidari A. A clinical and molecular pathology investigation of correlation spectroscopy (COSY), exclusive correlation spectroscopy (ECOSY), total correlation spectroscopy (TOCSY), heteronuclear single–quantum correlation spectroscopy (HSQC) and heteronuclear multiple–bond correlation spectroscopy (HMBC) comparative study on malignant and benign human cancer cells, tissues and tumors under synchrotron and synchrocyclotron radiations using cyclotron versus synchrotron, synchrocyclotron and the Large Hadron Collider (LHC) for delivery of proton and helium ion (charged particle) beams for oncology radiotherapy. Eur J Adv Eng Technol. 2018;5(7):414–426. Available from: https://ejaet.com/PDF/5-7/EJAET-5-7-414-426.pdf

Heidari A. Nano molecules incorporation into the nano polymeric matrix (NPM) by immersion of the nano polymeric modified electrode (NPME) as molecular enzymes and drug targets for human cancer cells, tissues and tumors treatment under synchrotron and synchrocyclotron radiations. J Oncol Res. 2018;1(1):1–20.

Heidari A. Use of molecular enzymes in the treatment of chronic disorders. Canc Oncol Open Access J. 2018;1(1):12–15. Available from: https://www.sciepub.com/reference/367953

Heidari A. Vibrational biospectroscopic study and chemical structure analysis of unsaturated polyamides nanoparticles as anti–cancer polymeric nanomedicines using synchrotron radiation. Int J Adv Chem. 2018;6(2):167–189. Available from: https://www.sciencepubco.com/index.php/IJAC/article/view/12528

Heidari A. Adamantane, irene, naftazone and pyridine–enhanced precatalyst preparation stabilization and initiation (PEPPSI) nano molecules. Madridge J Nov Drug Res. 2018;2(1):61–67. Available from: http://dx.doi.org/10.18689/mjndr-1000109

Heidari A. Heteronuclear single–quantum correlation spectroscopy (HSQC) and heteronuclear multiple–bond correlation spectroscopy (HMBC) comparative study on malignant and benign human cancer cells and tissues with the passage of time under synchrotron radiation. Madridge J Nov Drug Res. 2018;2(1):68–74. Available from: http://dx.doi.org/10.18689/mjndr-1000110

Heidari A, Gobato R. A novel approach to reduce toxicities and to improve bioavailabilities of DNA/RNA of human cancer cells–containing cocaine (coke), lysergide (lysergic acid diethyl amide or LSD), Δ⁹–tetrahydrocannabinol (THC), theobromine, caffeine, aspartame (APM) and zidovudine (ZDV) as anti–cancer nano drugs by coassembly of dual anti–cancer nano drugs to inhibit DNA/RNA of human cancer cells drug resistance. Parana J Sci Educ. 2018;4(6):1–17. Available from: https://www.researchgate.net/publication/326925595

Heidari A, Gobato R. Ultraviolet photoelectron spectroscopy (UPS) and ultraviolet–visible (UV–Vis) spectroscopy comparative study on malignant and benign human cancer cells and tissues with the passage of time under synchrotron radiation. Parana J Sci Educ. 2018;4(6):18–33. Available from: http://dx.doi.org/10.13140/RG.2.2.18899.68647

Gobato R, Heidari A, Mitra A. The creation of C13H20BeLi2SeSi. The proposal of a bio–inorganic molecule, using ab initio methods for the genesis of a nano membrane. Arc Org Inorg Chem Sci. 2018;3(4). Available from: https://www.researchgate.net/publication/326957287

Gobato R, Heidari A. Using the quantum chemistry for genesis of a nano biomembrane with a combination of the elements Be, Li, Se, Si, C and H. J Nanomed Res. 2018;7(4):241–252. Available from: http://dx.doi.org/10.15406/jnmr.2018.07.00194

Heidari A. Bastadins and bastaranes–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules. Glob Imaging Insights. 2018;3(4):1–7. Available from: https://oatext.com/bastadins-and-bastaranes%E2%80%93enhanced-precatalyst-preparation-stabilization-and-initiation-eppsi-nano-molecules.php

Heidari A. Fucitol, pterodactyladiene, DEAD or DEADCAT (diethyl azodicarboxylate), skatole, the NanoPutians, thebacon, pikachurin, tie fighter, spermidine and mirasorvone nano molecules incorporation into the nano polymeric matrix (NPM) by immersion of the nano polymeric modified electrode (NPME) as molecular enzymes and drug targets for human cancer cells, tissues and tumors treatment under synchrotron and synchrocyclotron radiations. Glob Imaging Insights. 2018;3(4):1–8. Available from: https://www.oatext.com/fucitol-pterodactyladiene-dead-or-deadcat-diethyl-azodicarboxylate-skatole-the-nanoputians-thebacon-pikachurin-tie-fighter.php

Dadvar E, Heidari A. A review on separation techniques of graphene oxide (GO)/base on hybrid polymer membranes for eradication of dyes and oil compounds: recent progress in graphene oxide (GO)/base on polymer membranes–related nanotechnologies. Clin Med Rev Case Rep. 2018;5:228. Available from: https://www.clinmedjournals.org/articles/cmrcr/clinical-medical-reviews-and-case-reports-cmrcr-5-228.php?jid=cmrcr

Heidari A, Gobato R. First–time simulation of deoxyuridine monophosphate (dUMP) and vomitoxin (deoxynivalenol (DON))–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules incorporation into the nano polymeric matrix (NPM) by immersion of the nano polymeric modified electrode (NPME) as molecular enzymes and drug targets for human cancer cells, tissues and tumors treatment under synchrotron and synchrocyclotron radiations. Parana J Sci Educ. 2018;4(6):46–67. Available from: https://vixra.org/pdf/1811.0456v1.pdf

Heidari A. Buckminsterfullerene (fullerene), bullvalene, dickite and Josiphos ligands nano molecules incorporation into the nano polymeric matrix (NPM) by immersion of the nano polymeric modified electrode (NPME) as molecular enzymes and drug targets for human hematology and thromboembolic diseases prevention, diagnosis and treatment under synchrotron and synchrocyclotron radiations. Glob Imaging Insights. 2018;3(4):1–7. Available from: https://www.oatext.com/buckminsterfullerene-fullerene-bullvalene-dickite-and-josiphos-ligands-nano-molecules-incorporation-into-the-nano-polymeric-matrix.php

Heidari A. Fluctuation X–ray scattering (FXS) and wide–angle X–ray scattering (WAXS) comparative study on malignant and benign human cancer cells and tissues under synchrotron radiation. Glob Imaging Insights. 2018;3(4):1–7. Available from: https://oatext.com/fluctuation-x%E2%80%93ray-scattering-fxs-and-wide%E2%80%93angle-x%E2%80%93ray-scattering-waxs-comparative-study-on-malignant-and-benign-human-cancer-cells-and-tissues-under-synchrotron-radiation.php

Heidari A. A novel approach to correlation spectroscopy (COSY), exclusive correlation spectroscopy (ECOSY), total correlation spectroscopy (TOCSY), incredible natural–abundance double–quantum transfer experiment (INADEQUATE), heteronuclear single–quantum correlation spectroscopy (HSQC), heteronuclear multiple–bond correlation spectroscopy (HMBC), nuclear Overhauser effect spectroscopy (NOESY) and rotating frame nuclear Overhauser effect spectroscopy (ROESY) comparative study on malignant and benign human cancer cells and tissues under synchrotron radiation. Glob Imaging Insights. 2018;3(5):1–9. Available from: https://www.oatext.com/pdf/GII-3-168.pdf

Heidari A. Terphenyl–based reversible receptor with rhodamine, rhodamine–based molecular probe, rhodamine–based using the spirolactam ring opening, rhodamine B with ferrocene substituent, calix[4]arene–based receptor, thioether + aniline–derived ligand framework linked to a fluorescein platform, mercuryfluor–1 (fluorescent probe), N,N’–dibenzyl–1,4,10,13–tetraraoxa–7,16–diazacyclooctadecane and terphenyl–based reversible receptor with pyrene and quinoline as the fluorophores–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules. Glob Imaging Insights. 2018;3(5):1–9. Available from: https://www.oatext.com/pdf/GII-3-169.pdf

Heidari A. Small–angle X–ray scattering (SAXS), ultra–small angle X–ray scattering (USAXS), fluctuation X–ray scattering (FXS), wide–angle X–ray scattering (WAXS), grazing–incidence small–angle X–ray scattering (GISAXS), grazing–incidence wide–angle X–ray scattering (GIWAXS), small–angle neutron scattering (SANS), grazing–incidence small–angle neutron scattering (GISANS), X–ray diffraction (XRD), powder X–ray diffraction (PXRD), wide–angle X–ray diffraction (WAXD), grazing–incidence X–ray diffraction (GIXD) and energy–dispersive X–ray diffraction (EDXRD) comparative study on malignant and benign human cancer cells and tissues under synchrotron radiation. Glob Imaging Insights. 2018;3(5):1–10. Available from: https://www.oatext.com/small-angle-x-ray-scattering-saxs-ultra-small-angle-x-ray-scattering-usaxs-fluctuation-x-ray-scattering-fxs-wide-angle-x-ray-scattering-waxs-grazing-incidence-small.php

Heidari A. Nuclear resonant inelastic X–ray scattering spectroscopy (NRIXSS) and nuclear resonance vibrational spectroscopy (NRVS) comparative study on malignant and benign human cancer cells and tissues under synchrotron radiation. Glob Imaging Insights. 2018;3(5):1–7. Available from: https://www.oatext.com/nuclear-resonant-inelastic-x-ray-scattering-spectroscopy-nrixss-and-nuclear-resonance-vibrational-spectroscopy-nrvs-comparative-study-on-malignant-and-benign-human-cancer-cells.php

Heidari A. Small–angle X–ray scattering (SAXS) and ultra–small angle X–ray scattering (USAXS) comparative study on malignant and benign human cancer cells and tissues under synchrotron radiation. Glob Imaging Insights. 2018;3(5):1–7. Available from: https://www.oatext.com/small-angle-x-ray-scattering-saxs-and-ultra-small-angle-x-ray-scattering-usaxs-comparative-study-on-malignant-and-benign-human-cancer.php

Heidari A. Curious chloride (CmCl3) and titanic chloride (TiCl4)–enhanced precatalyst preparation stabilization and initiation (EPPSI) nano molecules for cancer treatment and cellular therapeutics. J Cancer Res Ther Interv. 2018;1(1):1–10. Available from: https://www.auctoresonline.org/article/curious-chloride-28cmcl329-and-titanic-chloride-28ticl429E28093enhanced-precatalyst-preparation-stabilization-and-initiation-28eppsi29-nano-molecules-for-cancer-treatment-and-cellular-therapeutics

Gobato R, Gobato MRR, Heidari A, Mitra A. Spectroscopy and dipole moment of the molecule C13H20BeLi2SeSi via quantum chemistry using ab initio, Hartree–Fock method in the base set CC–pVTZ and 6–311G**(3df, 3pd). Arc Org Inorg Chem Sci. 2018;3(5):402–409. Available from: http://dx.doi.org/10.32474/AOICS.2018.03.000171

Heidari A. C60 and C70–encapsulating carbon nanotubes incorporation into the nano polymeric matrix (NPM) by immersion of the nano polymeric modified electrode (NPME) as molecular enzymes and drug targets for human cancer cells, tissues and tumors treatment under synchrotron and synchrocyclotron radiations. Integr Mol Med. 2018;5(3):1–8. Available from: https://www.oatext.com/c60-and-c70-encapsulating-carbon-nanotubes-incorporation-into-the-nano-polymeric-matrix-npm-by-immersion-of-the-nano-polymeric-modified.php

Heidari A. Two–dimensional (2D) 1H or proton NMR, 13C NMR, 15N NMR and 31P NMR spectroscopy comparative study on malignant and benign human cancer cells and tissues under synchrotron radiation with the passage of time. Glob Imaging Insights. 2018;3(6):1–8. Available from: https://www.oatext.com/two-dimensional-2d-1h-or-proton-nmr-13c-nmr-15n-nmr-and-31p-nmr-spectroscopy-comparative-study-on-malignant-and-benign-human-cancer-cells-and-tissues-under-synchrotron-radiation-with-the-passage-of-time.php

Heidari A. FT–Raman spectroscopy, coherent anti–Stokes Raman spectroscopy (CARS) and Raman optical activity spectroscopy (ROAS) comparative study on malignant and benign human cancer cells and tissues with the passage of time under synchrotron radiation. Glob Imaging Insights. 2018;3(6):1–8. Available from: https://www.oatext.com/ft-raman-spectroscopy-coherent-anti-stokes-raman-spectroscopy-cars-and-raman-optical-activity-spectroscopy-roas-comparative-study-on-malignant-and-benign-human-cancer-cells-and-tissues.php

Heidari A. A modern and comprehensive investigation of inelastic electron tunneling spectroscopy (IETS) and scanning tunneling spectroscopy on malignant and benign human cancer cells, tissues and tumors through optimizing synchrotron microbeam radiotherapy for human cancer treatments and diagnostics: an experimental biospectroscopic comparative study. Glob Imaging Insights. 2018;3(6):1–8. Available from: https://www.oatext.com/pdf/GII-3-175.pdf